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Can I import a budget for a standalone division? 
When importing from QuickBooks Online it is possible to also import a budget for the selected division from QuickBooks Online.

When importing from Xero or MYOB, it is not possible to import, from the source accounting system, the associated budget for a division. As a workaround, you can add a budget for the division from Excel.

More information about importing a budget from Excel into Fathom can be found here: Importing Budgets from Excel